miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse :: Contigs




EST name EST sequence
gi|122725359|gb|EH452379.1|EH452379 TCGATATCGCGGCCGCGGATCCGACGATCACTAAGACCGCAACAGATTTACGTGGATGAGGCACTCGATCATATAACACA
AATAAACGAGCCTTCCTTCCACATACCAAAGGAGTAACGTCTGTTTATTAATTTTTTAAATATGAAATTCACAGAAACGC
GCAAGTGACCTTGGGAATCGCAGGACTTTTCGGAAGTTTTGAACATCAATACGCGTTAGACACGCCACGGAAAAACTCGA
CATGAATGTTTCTCACGGACTACTTAACCGGACGATCTCCACAGTGAAGCATCCTCTGGACGCCGGTCGAGGATGCTGCA
ACTTCTCGGTGATCACCAGCGACGGGTTCGGTTCACCGATCCAGGACGAGCGCGAACAGTTCATCACGCGTCTGGTGCAG
ATAGCGGTGCTCTGCGTGCTCTCGCTGACTGTCATTTTCGGCATCTTCTTCCTCGGATGCAATCTACTGATAAAGTCAGA
GAGCATGATAAACTTGCTGGTGGAGGACAGGAGACCTTCTAAAGACGCGGAAATTATTATGATCGCTGCATGAGTGGAGC
AGACTGCGTGATCATCACCAGTGACTTTCCTTACACAAACTCATCTCTTCATGCATGAAAGTCACCAGCTGGTTTGAGTT
TCACACCAGTGCTGAATGGATTTTTATAAAAGGTAGCCTATATTTCATCTTGGATCTGAAAAACATTCATGTTGCAGATG
TAAAATGTAAAAAGTTTGTCTTACATGTTTGTCTTCATGGAGGAACACCGAGGGCAGAGAAAGATCCAGATTCATTACTC
CAGGATGGATCAGTTGGAATTGAGAACAATGTCACTTGTTTTATACACATTGGACGAATTGATTATGTTTGG




Most similar to sp|Q502I1|RPRMA_DANRE

>BLASTX 2.2.20 [Feb-08-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.
>sp|Q502I1|RPRMA_DANRE Protein reprimo A OS=Danio rerio GN=rprma
           PE=3 SV=1
          Length = 103

 Score =  114 bits (285), Expect = 9e-25
 Identities = 55/80 (68%), Positives = 65/80 (81%), Gaps = 1/80 (1%)
 Frame = +2

Query: 314 CCNFS-VITSDGFGSPIQDEREQFITRLVQIAVLCVLSLTVIFGIFFLGCNLLIKSESMI 490
           CCNFS V+T +GF +   DER  FI R+VQIAV+CVLSLTV+FGIFFLGCNLLIKSE MI
Sbjct: 23  CCNFSSVVTDNGFAAAAPDERSLFIMRIVQIAVMCVLSLTVVFGIFFLGCNLLIKSEGMI 82

Query: 491 NLLVEDRRPSKDAEIIMIAA 550
           N LV DRRPSK+ E +++ A
Sbjct: 83  NFLVTDRRPSKEVEAVIVGA 102